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5x first strand buffer  (Thermo Fisher)


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    Structured Review

    Thermo Fisher 5x first strand buffer
    5x First Strand Buffer, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/5x+first+strand+buffer/TRIS-HCL/pm41628766-56-27-51
    Average 99 stars, based on 1 article reviews
    5x first strand buffer - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Incubation:

    Article Title: Isolation, characterization, and host specificity of Solenopsis invicta virus 6 (Cripavirus porteri), a dicistrovirus from the red imported fire ant, Solenopsis invicta.
    Article Snippet: This is a PDF of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability.. This version will undergo additional copyediting, typesetting and review before it is published in its final form.. As such, this version is no longer the Accepted Manuscript, but it is not yet the definitive Version of Record; we are providing this early version to give early visibility of the article.

    Article Title: Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms
    Article Snippet: Total RNA was purified from 2 to 5 ×10 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65 °C, 0.5–1 μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68 °C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs) at 42 °C for 1 h and then heat inactivated at 95 °C for 5 min. Quantitative gene expression analyses were performed by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Article Title: The human branchpoint-interacting stem loop sequence and structure regulates U2 snRNA expression, branchpoint recognition, and transcriptome
    Article Snippet: .. Extension buffer containing 4 μl 5X First strand buffer (Invitrogen), 1 μl 0.1 M DTT, and 1 μl of a modified MMLV-RT was added and reactions were incubated at 55°C for 50 mins and 85°C for 5 min. ..

    Reverse Transcription:

    Article Title: Multifaceted B cell response to transient HIV viremia in elite controllers.
    Article Snippet: .. Each well then received 5.4 μL of reverse transcription mix containing Superscript II reverse transcriptase (50 units) (Thermo Fisher), RNAse inhibitor (10 units) (Tarka Bio), 5X first strand buffer (Thermo Fisher), DTT (5mM) (Thermo Fisher), betaine (1M) (Sigma), MgCl2 (12mM) (Sigma Aldrich), Nuclease-free water (Thermo Fisher) and template switching-oligo (5′- AAGCAGTGGTATCAACGCAGAGTACATr GrG + G-3′) (1μM). ..

    Article Title: Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms
    Article Snippet: Total RNA was purified from 2 to 5 ×10 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65 °C, 0.5–1 μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68 °C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs) at 42 °C for 1 h and then heat inactivated at 95 °C for 5 min. Quantitative gene expression analyses were performed by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Article Title: Patient-Derived Medullary Thyroid Cancer Organoids: A Potential Model for Mechanistic Studies on Diagnostics and Therapy
    Article Snippet: Total RNA from patient material (n=3) and organoids (n=3) was extracted (RNeasyTM Mini Kit, Qiagen). .. To obtain cDNA, 500ng of total RNA was reverse transcribed using 1 μL 10 mM dNTP Mix, 100 ng random primers, 5x First-strand Buffer, 0.1 M DTT, 40 units of RNase OUT, and 200 units of M-MLV RT, in a volume of 20 μL for each reaction (all Invitrogen). qPCR was performed using Bio-Rad iQ SYBR Green Supermix according to the manufacturer’s instructions. ..

    Article Title: The AMPK-related kinase NUAK1 regulates neuronal morphogenesis through the RNA splicing co-factor SON
    Article Snippet: RNA concentration and purity were determined using the NanoDrop 2000 Spectrophotometer (ThermoScientific). .. Reverse transcription was performed mixing 500 ng of RNA with 10 mM dNTPs (EuroMedex, EUA01601, final concentration 500 μM), OligodT 12-18 primer (Invitrogen, 18418012, final mass 25 μg), 10 μM DTT and 5x First Strand Buffer (SuperScript II Reverse transcriptase 200 U/μL, Invitrogen, 18064-014, final concentration 1x), reaching a final volume of 19 μL. .. SuperScriptTM II reverse transcriptase (SuperScript II Reverse transcriptase 200 U/μL, Invitrogen, 18064-014) was added at 1 μL per reaction.

    Random Hexamer:

    Article Title: Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms
    Article Snippet: Total RNA was purified from 2 to 5 ×10 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65 °C, 0.5–1 μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68 °C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs) at 42 °C for 1 h and then heat inactivated at 95 °C for 5 min. Quantitative gene expression analyses were performed by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Virus:

    Article Title: Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms
    Article Snippet: Total RNA was purified from 2 to 5 ×10 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65 °C, 0.5–1 μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68 °C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs) at 42 °C for 1 h and then heat inactivated at 95 °C for 5 min. Quantitative gene expression analyses were performed by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Gene Expression:

    Article Title: Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms
    Article Snippet: Total RNA was purified from 2 to 5 ×10 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65 °C, 0.5–1 μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68 °C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs) at 42 °C for 1 h and then heat inactivated at 95 °C for 5 min. Quantitative gene expression analyses were performed by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Quantitative RT-PCR:

    Article Title: Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms
    Article Snippet: Total RNA was purified from 2 to 5 ×10 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65 °C, 0.5–1 μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68 °C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs) at 42 °C for 1 h and then heat inactivated at 95 °C for 5 min. Quantitative gene expression analyses were performed by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    SYBR Green Assay:

    Article Title: Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms
    Article Snippet: Total RNA was purified from 2 to 5 ×10 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65 °C, 0.5–1 μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68 °C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs) at 42 °C for 1 h and then heat inactivated at 95 °C for 5 min. Quantitative gene expression analyses were performed by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Article Title: Patient-Derived Medullary Thyroid Cancer Organoids: A Potential Model for Mechanistic Studies on Diagnostics and Therapy
    Article Snippet: Total RNA from patient material (n=3) and organoids (n=3) was extracted (RNeasyTM Mini Kit, Qiagen). .. To obtain cDNA, 500ng of total RNA was reverse transcribed using 1 μL 10 mM dNTP Mix, 100 ng random primers, 5x First-strand Buffer, 0.1 M DTT, 40 units of RNase OUT, and 200 units of M-MLV RT, in a volume of 20 μL for each reaction (all Invitrogen). qPCR was performed using Bio-Rad iQ SYBR Green Supermix according to the manufacturer’s instructions. ..

    Real-time Polymerase Chain Reaction:

    Article Title: Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms
    Article Snippet: Total RNA was purified from 2 to 5 ×10 cells with TRIzol (Invitrogen) and 1–2 μg RNA was treated with DNase I (Thermo Fisher Scientific) for 15 min at room temperature. .. After heat inactivation of DNase I with EDTA for 10 min at 65 °C, 0.5–1 μg RNA was incubated with a 4:1 mixture of oligo(dT) primers and random hexamer at 68 °C for 10 min. RNA/primers were incubated with Moloney murine leukemia virus reverse transcription (M-MLV RT) (Thermo Fisher Scientific), 5X first strand buffer (Thermo Fisher Scientific), 10 mM dithiothreitol (Thermo Fisher Scientific), RNAsin (Promega), and 0.5 mM deoxynucleoside triphosphates (New England Biolabs) at 42 °C for 1 h and then heat inactivated at 95 °C for 5 min. Quantitative gene expression analyses were performed by real-time RT-PCR using Power SYBR Green Master Mix (Applied Biosystems) and analyzed on a ViiA 7 Real-Time PCR System (Applied Biosystems). ..

    Article Title: Patient-Derived Medullary Thyroid Cancer Organoids: A Potential Model for Mechanistic Studies on Diagnostics and Therapy
    Article Snippet: Total RNA from patient material (n=3) and organoids (n=3) was extracted (RNeasyTM Mini Kit, Qiagen). .. To obtain cDNA, 500ng of total RNA was reverse transcribed using 1 μL 10 mM dNTP Mix, 100 ng random primers, 5x First-strand Buffer, 0.1 M DTT, 40 units of RNase OUT, and 200 units of M-MLV RT, in a volume of 20 μL for each reaction (all Invitrogen). qPCR was performed using Bio-Rad iQ SYBR Green Supermix according to the manufacturer’s instructions. ..

    Modification:

    Article Title: The human branchpoint-interacting stem loop sequence and structure regulates U2 snRNA expression, branchpoint recognition, and transcriptome
    Article Snippet: .. Extension buffer containing 4 μl 5X First strand buffer (Invitrogen), 1 μl 0.1 M DTT, and 1 μl of a modified MMLV-RT was added and reactions were incubated at 55°C for 50 mins and 85°C for 5 min. ..

    Concentration Assay:

    Article Title: The AMPK-related kinase NUAK1 regulates neuronal morphogenesis through the RNA splicing co-factor SON
    Article Snippet: RNA concentration and purity were determined using the NanoDrop 2000 Spectrophotometer (ThermoScientific). .. Reverse transcription was performed mixing 500 ng of RNA with 10 mM dNTPs (EuroMedex, EUA01601, final concentration 500 μM), OligodT 12-18 primer (Invitrogen, 18418012, final mass 25 μg), 10 μM DTT and 5x First Strand Buffer (SuperScript II Reverse transcriptase 200 U/μL, Invitrogen, 18064-014, final concentration 1x), reaching a final volume of 19 μL. .. SuperScriptTM II reverse transcriptase (SuperScript II Reverse transcriptase 200 U/μL, Invitrogen, 18064-014) was added at 1 μL per reaction.



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